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2025 Fall Allotrope® Connect Workshop

Companies and Organizations Registered to Attend:

Amgen • Agilent • ArangoDB • Astrix Technology • Bayer • Bio-Rad • Biovia • Boehringer-Ingelheim • CTC

Registration is now open

 

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​Allotrope Connect Fall 2025 Workshop Hosted by  

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Please join us in shaping the future! The next Allotrope® Connect Workshop is taking place on October 28–30, 2025, hosted by Bio-Rad in Hercules, CA. We invite industry and not-for-profit experts in lab informatics, digital transformation, regulatory science, technology, and manufacturing to collaborate on finding solutions for today’s pressing lab and manufacturing challenges. In the workshop, we will bring together community experts to continue and explore the work on real-world problems with the goal of defining pre-competitive project proposals that will combine the efforts across organizations to accelerate the pace of digital transformation.

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Participation is open to the public, regardless of Allotrope membership, and is free to attend in person or remotely.

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IN-PERSON REGISTRATION CLOSES OCTOBER 24th

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Dates:

October 28 – 30, 2025

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Workshop Location:

Bio-Rad
225 Linus Pauling Drive, Suite C
Hercules, CA 94547

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Cost:

Free to attend

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Eligibility to Attend:

With the exception of the Board meeting on Oct 30th, all events are open to the public regardless of membership in Allotrope Foundation

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Remote Participation:

Virtual attendance will be available via MS Teams

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Workshop Agenda:

Day 1 – October 28 (PDT time)

  • 08:00-09:00 Registration, Breakfast, & Networking

  • 09:00-09:30 Welcome (Janet Cheetham, Chair Allotrope Foundation)

                                  Bio-Rad Keynote 1

  • 09:30-10:30 Current Allotrope Priorities & Draft Value Roadmap

                                  (Vinny Antonucci, Vice Chair Allotrope Foundation)
                                  Important Step on Roadmap: Connected Domains Data Model

                                  (Ben Woolford-Lim, Allotrope Product Team)

  • 10:30-11:00 Break

  • 11:00-12:00 Presentation 1 – Product Announcements:

                                  - Shimadzu LabSolutions support for Allotrope ADF/ASM

                                    (Timothy Lee, Shimadzu)

                                  - A new headless cloud-ready version of OpenChrom is available that can be easily integrated

                                    into existing environments with a strong emphasis on automation.

                                    (Matthias Mailänder, Lablicate)

                                  Presentation 2 – ASM use case in the upcoming CogniFlow project: an autonomous, intelligent

                                  multi-data processing pipeline assembler and manager for wastewater treatment

                                  monitoring. (Ricardo Cunha, IUTA) 

  • 12:00-01:00 Lunch

  • 01:00-02:00 Digital Manufacturing Workstream Update

                                  Progress on problem scope, presentation of materials, questions requiring community input

                                  (Gang Xue)

  • 02:00-03:00 Digital Analytical Methods Workstream Update

                                  Progress on problem scope, presentation of materials, questions requiring community input

                                  (Vinny Antonucci)

  • 03:00-03:30 Break

  • 03:30-04:30 CMC Workstream Update

                                  Progress on problem scope, presentation of materials, questions requiring community input

                                  (Janet Cheetham)

  • 04:30-04:50 Cloud Infrastructure & Services Workstream & Ontology Federation Update 

  • 04:50-05:00 Wrap up Day One

                                  (Janet Cheetham, Chair Allotrope Foundation)

  • 06:30-09:00 Reception and Dinner           

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Day 2 – October 29 (PDT time)

  • 08:00-08:30 Registration & Breakfast

                                  Welcome

                                  (Vinny Antonucci, Vice Chair Allotrope Foundation)

  • 08:30-09:30 - Presentation 3 – BASF Implementation Update

                                    Discussion: ASM data visualization as a tool to accelerate ASM adoption

                                    (BASF)
                                 
 - Presentation 4 – ASM for NMR

                                    (John Hollerton, Mestrelab/SciY)​

  • 09:30-10:00 Bio-Rad Keynote 2

                                  (Shakila Pothini, VP, Software, Bio-Rad Laboratories)​

  • 10:00-10:30 Presentation 5 – Standardized Lab Data Integration based on OPC UA & Allotrope:

                                  Vendor-Neutral Data for BioPharma Manufacturing and Automated Analytical Workflows

                                  (Heiko Fessenmayr, Agilent Technologies) 

  • 10:30-11:00 Break

  • 11:00-12:00 Ideation: Use of AI to accelerate AFO & ASM creation and governance;

                                  what has been accomplished already and what is soon possible ? (TBD)

  • 12:00-01:00 Lunch

  • 01:00-02:30 Implementation Discussion:  To implement AFO/ASM solutions in your ecosystem

                                  what are your business, technical, quality Questions, Needs, and Challenges ?

  • 02:30-03:00 Ideation: Current key problem statements identified focus on later stages of

                                  development and technical implementation details.

                                  Is there another problem statement in early research & development stages that

                                  we should target to enable with AFO / ASM as well ?

  • 03:00-03:30 Break

  • 03:30-04:30 Look Ahead to 2026: Are there opportunities to update our current Priorities and

                                  Value Roadmap based on our workshop discussions ?

  • 04:30-05:00 Wrap up Day Two

                                  (Janet Cheetham, Chair Allotrope Foundation) ​

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Day 3 – October 30 (PDT time)

  • 09:00-05:00 Allotrope Foundation Board Meeting (Closed session) â€‹

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BioRad_Laboratories_Logo_svg.png

​​​Presentation Details:

Day 1 – October 28 (PDT time)

  • 09:00-09:30 

Bio-Rad Keynote 1

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  • 11:00-12:00 

Shimadzu LabSolutions support for Allotrope ADF/ASM (Timothy Lee, R&D Software Engineer Team Leader, Shimadzu)

LabSolutions exports chromatographic data to ADF and ASM files. The LabSolutions platform supports data management for many analytical instruments and can potentially export Allotrope-formatted files for more than chromatographic data.

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Tim Lee is a Software Engineer Team Leader for the R&D Center of Shimadzu Scientific Instruments (SSI), a Shimadzu Corporation company. For the over 10 years that Tim has worked for SSI, he helped build support for Allotrope within Shimadzu Corporation.

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A new headless cloud-ready version of OpenChrom is available that can be easily integrated into existing environments with a strong emphasis on automation (Matthias Mailänder, Software Engineer, Lablicate GmbH)

Matthias Mailänder is a food chemist who works as a software engineer at Lablicate GmbH in Hamburg working on OpenChrom a multi-vendor chromatography data system. He is a strong advocate of Open Source software and FAIR data.

 

ASM use case in the upcoming CogniFlow project: an autonomous, intelligent multi-data processing pipeline assembler and manager for wastewater treatment monitoring (Dr Ricardo Cunha, Institut für Umwelt & Energie, Technik & Analytik e. V. - IUTA)

The upcoming CogniFllow project aims to enable the autonomous and intelligent data processing and retrieval of early signals indicating a loss of wastewater treatment performance, as well as the detection of chemical spills and deviations in chemical and biological conditions. Analytical data in laboratories is diverse and required for a comprehensive and broad capability to detect anomalies. Thus, combining ASM with open communication protocols (e.g. LADS OPC UA) can significantly enhance the transfer of data from devices to data processing pipelines while ensuring FAIRness. ASM models for major analytical data are already available and will support the CogniFlow project in data harmonisation. The presentation will cover the main concept of CogniFlow, with a focus on the ASM use case

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Ricardo Cunha holds an MSc in Bio and Chemical Engineering from the University of Minho, Portugal, and a PhD in Environmental Engineering from Wageningen University, the Netherlands. Since 1 June 2019, he has worked as a project manager and research assistant at IUTA. He has an academic and professional background in environmental technology, including the design, operation and maintenance of aerobic and anaerobic wastewater treatment technologies, and has implemented relevant interdisciplinary applications in various projects. These include the (bio)crystallisation of phosphorus in biological aggregates during anaerobic wastewater treatment; image analysis for morphological characterisation of aerobic flocculation sludge; the development of analytical methods for detecting trace contaminants in water samples using two-dimensional liquid chromatography (2D-LC), ion mobility and high-resolution mass spectrometry (HRMS); and the development of data processing routines for correlating effect-based analysis with non-target screening. 


    

Day 2 – October 29 (PDT time)

  • 08:30-09:30

BASF Implementation Update

 

ASM for NMR (John Hollerton, Mestrelab/SciY)​

Mestrelab now supports reading and writing ASM files for NMR. This presentation and demo shows how ASM files can be generated automatically and fed into a data processing pipeline. It also looks at current limitations and potential future developments to extend the capability of ASM.

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John Hollerton had a career of over 40 years at GSK with a hybrid role of analytical chemistry and informatics culminating in a role of Director of Analytical Informatics. Former member of the Allotrope Executive team and the GSK representative on the Allotrope Board. Now working with Mestrelab/SciY and representing them on the Allotrope Board.

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  • 09:30-10:00

Bio-Rad Keynote 2 (Shakila Pothini, VP, Software, Bio-Rad Laboratories)​

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  • 10:00-10:30

Standardized Lab Data Integration based on OPC UA & Allotrope: Vendor-Neutral Data for BioPharma Manufacturing and Automated Analytical Workflows (Heiko Fessenmayr, Software R&D Lab Informatics System Architect, Agilent Technologies)​

This presentation demonstrates how the unification of standardized lab instrument communication and harmonized, vendor-neutral data formats becomes a reality — by exposing Allotrope data model information as an OPC UA Information Model.
Such an approach is highly relevant in domains like BioPharma manufacturing, and it is increasingly important for the automation of offline analytical laboratories.
Mapping Allotrope data into an OPC UA Information Model enables the direct exposure of fine-grained information without the need to transport or parse the full ASM JSON files.
The session will showcase a proof-of-concept that exposes Liquid Chromatography (LC) data—based on the Allotrope model—as an OPC UA Information Model, accessible via traditional OPC UA protocols as well as OPC UA REST APIs.
Whether you're a lab equipment vendor, software provider, system integrator, or data scientist, this session illustrates how (LADS) OPC UA and Allotrope data models together pave the way for next-generation lab connectivity, streamlined workflows, and truly standardized, vendor-neutral data usability.

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​Heiko Fessenmayr is a distinguished figure in the realm of analytical laboratory standards, focusing on the development of data formats and communication protocols. With over five years of dedicated service, he represents Agilent Technologies at the Allotrope Foundation, contributing significantly to the advancement of the ADF/ASM standard data format.
In addition to his foundational work, Heiko plays an instrumental role in enhancing analytical laboratory IoT communication standards through OPC-UA technologies. His leadership as chairman of the OPC-UA ASI/CAISI working group is pivotal in the standardized integration of analytical devices into comprehensive data systems.
Heiko’s expertise extends to the conceptualization of Lab Informatics solutions, particularly for chromatography data systems and analytical data content management systems. His comprehensive experience, spanning over two decades with HP/Agilent, encompasses software engineering, project and program management, technical marketing management, and, since 2015, his influential role as an R&D Lab Informatics System Architect.

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